Current Database:   
Search in Current Database: 
Public SmartTables Directory

Welcome to SmartTables

A SmartTable is a collection of BioCyc objects, such as genes or metabolites, together with associated data, that can be created, edited, manipulated, and shared on the web.

[SmartTables Documentation]  [Directory of SmartTables Users]

Sort upSort down SmartTable
Sort upSort down Description
Organism
Type
Size
Sort upSort down Owner
Sort upSort down Update Time
1all attenuators, cryptic prophages, mRNA binding sites, origin of replication, extragenic sites, ph
Escherichia coli K-12 substr. MG1655
mrna-binding-sites, dna-segments, extragenic-sites, dna-binding-sites, transcription-units, terminators, promoters
13228
Carl StoneTue Jan 11 2022 12:24 am
2Hall Study humann3 pathways
MetaCyc
string
320
Poorani SubramanianThu Jan 06 2022 10:25 am
3Multi-cause, multi-confounder front-door motif
Escherichia coli K-12 substr. MG1655
all-genes
1945
Jeremy ZuckerTue Dec 21 2021 02:02 pm
4Genes regulated by RpoS and RpoDTo get a list of all genes regulated by sigma S: From rpoS, I added a transform to the gene product. Selected the gene product column and added the property Recognized-Promoters. Selected that column and added the transform "transcription units of promoter". Selected that column and added the transform "Genes of transcription unit". I then added a new row, entered rpoD (selected "rpoD (All Genes)" from autocomplete options), and all its other columns were filled in automatically.
Escherichia coli K-12 substr. MG1655
all-genes
2
Suzanne PaleyTue Dec 21 2021 10:45 am
548 pp sars, Bannerman et al 2021
Homo sapiens
pathways, all-genes
49
Bridget BannermanSat Dec 04 2021 09:56 am
6Second Napkin problem (with two or more confounders)W->R->X->Y<-V->W<-U->X
Escherichia coli K-12 substr. MG1655
all-genes
911
Jeremy ZuckerFri Oct 29 2021 03:05 pm
7All instances of Genes in Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
all-genes
6374
Roland BarriotThu Oct 14 2021 08:22 pm
8All instances of Pathways in Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
pathways
287
Roland BarriotThu Oct 14 2021 01:36 pm
9All instances of Genes in Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
all-genes
4072
Roland BarriotThu Oct 14 2021 01:35 pm
10All instances of Genes in Bacillus subtilis subtilis 168
Bacillus subtilis subtilis 168
all-genes
4461
Roland BarriotThu Oct 14 2021 01:32 pm
11All instances of Pathways in Bacillus subtilis subtilis 168
Bacillus subtilis subtilis 168
pathways
328
Roland BarriotThu Oct 14 2021 01:31 pm
12All proteins (polypeptides + protein complexes) of E. coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
compounds, complexes, proteins
5731
Adrian LangeMon Oct 11 2021 08:49 am
13All instances of Genes in Escherichia coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
all-genes
4523
Roland BarriotWed Oct 06 2021 01:43 am
14all transcription-units
Escherichia coli K-12 substr. MG1655
transcription-units
3697
Roland BarriotWed Oct 06 2021 01:26 am
15All instances of Pathways in Escherichia coli K-12 substr. MG1655
Escherichia coli K-12 substr. MG1655
pathways
442
Roland BarriotTue Oct 05 2021 08:41 pm
16L. plantarum WCFS1 transportersL. plantarum transporters; created in the Tier 3 db to compare NCBI annotation output with Transport DB. Search terms used "transporter, permease, channel, antiporter, symporter, flippase, exporter, efflux".
Lactobacillus plantarum WCFS1
proteins
364
Amanda MackieTue Sep 07 2021 08:52 pm
17E. coli K-12 substr. MG1655 genes with TAG stop codon - no second stop codon in 200 bp downstream
Escherichia coli K-12 substr. MG1655
all-genes
45
Gabriella MachadoSat Aug 28 2021 03:54 am
18Genes of E. coli K-12 substr. MG1655 with TAG stop codon

string
330
Gabriella MachadoSat Aug 28 2021 03:26 am
19E. coli K-12 substr. MG1655 genes with "other stop codons"
Escherichia coli K-12 substr. MG1655
all-genes
249
Gabriella MachadoWed Aug 11 2021 09:49 am
20Ahr Ligands of L-Try degradation via microbes
MetaCyc
pathways
5
Aldrich ZhaoMon Jul 26 2021 11:16 pm
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 Next Show all 

Report Errors or Provide Feedback
Page generated by Pathway Tools version 25.5 (software by SRI International) on Sun Jan 23, 2022, BIOCYC15.
EcoCyc version 25.5.