|  
SmartTable |
Description |
Organism |
Type |
Size |
Owner |
Update Time |
|---|
| 1 | all attenuators, cryptic prophages, mRNA binding sites, origin of replication, extragenic sites, ph |
| Escherichia coli K-12 substr. MG1655
| mrna-binding-sites, dna-segments, extragenic-sites, dna-binding-sites, transcription-units, terminators, promoters
| 13228
| Carl Stone | Tue Jan 11 2022 12:24 am |
| 2 | Hall Study humann3 pathways |
| MetaCyc
| string
| 320
| Poorani Subramanian | Thu Jan 06 2022 10:25 am |
| 3 | Multi-cause, multi-confounder front-door motif |
| Escherichia coli K-12 substr. MG1655
| all-genes
| 1945
| Jeremy Zucker | Tue Dec 21 2021 02:02 pm |
| 4 | Genes regulated by RpoS and RpoD | To get a list of all genes regulated by sigma S: From rpoS, I added a transform to the gene product. Selected the gene product column and added the property Recognized-Promoters. Selected that column and added the transform "transcription units of promoter". Selected that column and added the transform "Genes of transcription unit". I then added a new row, entered rpoD (selected "rpoD (All Genes)" from autocomplete options), and all its other columns were filled in automatically.
| Escherichia coli K-12 substr. MG1655
| all-genes
| 2
| Suzanne Paley | Tue Dec 21 2021 10:45 am |
| 5 | 48 pp sars, Bannerman et al 2021 |
| Homo sapiens
| pathways, all-genes
| 49
| Bridget Bannerman | Sat Dec 04 2021 09:56 am |
| 6 | Second Napkin problem (with two or more confounders) | W->R->X->Y<-V->W<-U->X
| Escherichia coli K-12 substr. MG1655
| all-genes
| 911
| Jeremy Zucker | Fri Oct 29 2021 03:05 pm |
| 7 | All instances of Genes in Saccharomyces cerevisiae S288c |
| Saccharomyces cerevisiae S288c
| all-genes
| 6374
| Roland Barriot | Thu Oct 14 2021 08:22 pm |
| 8 | All instances of Pathways in Mycobacterium tuberculosis H37Rv |
| Mycobacterium tuberculosis H37Rv
| pathways
| 287
| Roland Barriot | Thu Oct 14 2021 01:36 pm |
| 9 | All instances of Genes in Mycobacterium tuberculosis H37Rv |
| Mycobacterium tuberculosis H37Rv
| all-genes
| 4072
| Roland Barriot | Thu Oct 14 2021 01:35 pm |
| 10 | All instances of Genes in Bacillus subtilis subtilis 168 |
| Bacillus subtilis subtilis 168
| all-genes
| 4461
| Roland Barriot | Thu Oct 14 2021 01:32 pm |
| 11 | All instances of Pathways in Bacillus subtilis subtilis 168 |
| Bacillus subtilis subtilis 168
| pathways
| 328
| Roland Barriot | Thu Oct 14 2021 01:31 pm |
| 12 | All proteins (polypeptides + protein complexes) of E. coli K-12 substr. MG1655 |
| Escherichia coli K-12 substr. MG1655
| compounds, complexes, proteins
| 5731
| Adrian Lange | Mon Oct 11 2021 08:49 am |
| 13 | All instances of Genes in Escherichia coli K-12 substr. MG1655 |
| Escherichia coli K-12 substr. MG1655
| all-genes
| 4523
| Roland Barriot | Wed Oct 06 2021 01:43 am |
| 14 | all transcription-units |
| Escherichia coli K-12 substr. MG1655
| transcription-units
| 3697
| Roland Barriot | Wed Oct 06 2021 01:26 am |
| 15 | All instances of Pathways in Escherichia coli K-12 substr. MG1655 |
| Escherichia coli K-12 substr. MG1655
| pathways
| 442
| Roland Barriot | Tue Oct 05 2021 08:41 pm |
| 16 | L. plantarum WCFS1 transporters | L. plantarum transporters; created in the Tier 3 db to compare NCBI annotation output with Transport DB. Search terms used "transporter, permease, channel, antiporter, symporter, flippase, exporter, efflux".
| Lactobacillus plantarum WCFS1
| proteins
| 364
| Amanda Mackie | Tue Sep 07 2021 08:52 pm |
| 17 | E. coli K-12 substr. MG1655 genes with TAG stop codon - no second stop codon in 200 bp downstream |
| Escherichia coli K-12 substr. MG1655
| all-genes
| 45
| Gabriella Machado | Sat Aug 28 2021 03:54 am |
| 18 | Genes of E. coli K-12 substr. MG1655 with TAG stop codon |
|
| string
| 330
| Gabriella Machado | Sat Aug 28 2021 03:26 am |
| 19 | E. coli K-12 substr. MG1655 genes with "other stop codons" |
| Escherichia coli K-12 substr. MG1655
| all-genes
| 249
| Gabriella Machado | Wed Aug 11 2021 09:49 am |
| 20 | Ahr Ligands of L-Try degradation via microbes |
| MetaCyc
| pathways
| 5
| Aldrich Zhao | Mon Jul 26 2021 11:16 pm |
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